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References

<bibtex> @article{1404877, author = {Higham,, Desmond J.}, title = {Modeling and Simulating Chemical Reactions}, journal = {SIAM Rev.}, volume = {50}, number = {2}, year = {2008}, issn = {0036-1445}, pages = {347–368}, url = {http://www.maths.strath.ac.uk/~aas96106/rep02_2007.pdf}, publisher = {Society for Industrial and Applied Mathematics}, address = {Philadelphia, PA, USA}, }

@article{,

author = 	 {Olaf Wolkenhauer},
title = 	 {Systems biology - Dynamic pathway modeling},
publisher = 	 {},
url =          {http://www.sbi.uni-rostock.de/dokumente/t_sb.pdf},
year = 	 2008

}

@article{,

author = 	 {Z. Zi and E. Klipp},
title = 	 {Steady state analysis of signal response in receptor trafficking networks},
publisher = 	 {GENOME INFORMATICS},
url =          {http://www.jsbi.org/modules/journal1/index.php/IBSB07/IBSB07010.pdf},
year = 	 2007

}

@article{,

author = 	 {Nobu Ishiia and Yoshi Sugaa},
title = 	 {Dynamic simulation of an in vitro multi-enzyme system},
publisher = 	 {FEBS Letters},
url =          {http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6T36-4MT5T8K-1&_user=499892&_rdoc=1&_fmt=&_orig=search&_sort=d&view=c&_acct=C000024518&_version=1&_urlVersion=0&_userid=499892&md5=1e3bc6bb5e565b39f60bdaefd1beef4e},
year = 	 2007

}

@book{Wilk06,

author = {Wilkinson, D. J.},
title = {Stochastic modelling for systems biology},
year = {2006},
      publisher = {Chapman and Hall/CRC Press},
      address = {Boca Raton, Florida},

}

@book{Law06,

author = {Law, Averill  },
citeulike-article-id = {3085571},
edition = {4},
howpublished = {Hardcover},
isbn = {0073294411},
keywords = {2006, analysis, discrete-event, random-number, simulation, statistics},
month = {July},
posted-at = {2008-08-05 14:19:30},
priority = {0},
publisher = {McGraw-Hill Science/Engineering/Math},
title = {Simulation Modeling and Analysis with Expertfit Software},
url = {http://www.amazon.ca/exec/obidos/redirect?tag=citeulike09-20\&amp;path=ASIN/0073294411},
year = {2006}

}

@article{Kuhl06,

author = 	 {Peter W. Kühl and Manfred Jobmann},
title = 	 {Receptor-Agonist Interactions in Service-Theoretic Perspective, Effects of Molecular Timing on the Shape of Dose-Response Curves },
publisher = 	 {Informa Healthcare, London},
url =          {http://pdfserve.informaworld.com/77202_751311125_742026615.pdf},
year = 	 2006

}

@article{,

author = 	 {M. Ullah and H. Schmidt,},
title = 	 {Deterministic modelling and stochastic simulation

of biochemical pathways using MATLAB},

  publisher = 	 {IEE Proc.-Syst. Biol., Vol. 153, No. 2},
url =          {http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6T36-4MT5T8K-1&_user=499892&_rdoc=1&_fmt=&_orig=search&_sort=d&view=c&_acct=C000024518&_version=1&_urlVersion=0&_userid=499892&md5=1e3bc6bb5e565b39f60bdaefd1beef4e},
year = 	 2006

}

@article{,

author = 	 {S. C. Kou and B.J. Cherayil},
title = 	 {Single-Molecule Michaelis-Menten Equations},
publisher = 	 {J. Phys. Chem.},
url  =         {http://pubs.acs.org/doi/pdf/10.1021/jp051490q?cookieSet=1},
year = 	 2005

}

@article{Cao2004,

author = {Y Cao, H Li, and L Petzold },
journal = {Journal of Chemical Physics},
pages = {4059-4067},
title = {“Efficient formulation of the stochastic simulation algorithm for

chemically reacting systems”},

volume = {121 (9)},
year = {2004},
      url = {http://repositories.cdlib.org/cgi/viewcontent.cgi?article=1268&context=postprints},

}

@article{citeulike:1224056,

  address = {Amsterdam, The Netherlands, The Netherlands},
  author = {Priami, Corrado   and Regev, Aviv   and Shapiro, Ehud   and Silverman, William  },
  citeulike-article-id = {1224056},
  doi = {http://dx.doi.org/10.1016/S0020-0190(01)00214-9},
  issn = {0020-0190},
  journal = {Inf. Process. Lett.},
  keywords = {biology, modeling, process-algebra, systems-biology},
  month = {October},
  number = {1},
  pages = {25--31},
  posted-at = {2007-04-13 13:27:43},
  priority = {3},
  publisher = {Elsevier North-Holland, Inc.},
  title = {Application of a stochastic name-passing calculus to representation and simulation of molecular processes},
  url = {http://www.sciencedirect.com/science?_ob=MImg&_imagekey=B6V0F-43VY9PD-4-2&_cdi=5645&_user=499892&_orig=search&_coverDate=10%2F15%2F2001&_sk=999199998&view=c&wchp=dGLzVlz-zSkzS&md5=d68fdb6eae88e5388d4683a1883ed6a9&ie=/sdarticle.pdf},
  volume = {80},
  year = {2001}

}

@article{ author = {Regev, A. and Silverman, W. and Shapiro, E. },

citeulike-article-id = {942077},
journal = {Pac Symp Biocomput},
keywords = {genettic-interactions},
pages = {459--470},
posted-at = {2006-11-13 20:19:27},
priority = {2},
title = {Representation and simulation of biochemical processes using the pi-calculus process algebra.},
url = {http://helix-web.stanford.edu/psb01/regev.pdf},
year = {2001}

}

@article{Gill77,

author = {Gillespie, D. T. },
journal = {The Journal of Physical Chemistry},
number = {25},
pages = {2340--2361},
title = {Exact Stochastic Simulation of Coupled Chemical Reactions},
volume = {81},
year = {1977},
      url = {http://www.cs.princeton.edu/picasso/seminarsS05/Karig/gillespie77.pdf},

}

</bibtex>

biological_systems/ref.txt · Last modified: Wednesday, 11 March 2009 : 11:26:01 by s040995